IL_4V57_301

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4V57|1|DB|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_301 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1889

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V57|1|DB|G|1432
4V57|1|DB|A|1433
4V57|1|DB|A|1434
4V57|1|DB|G|1435
*
4V57|1|DB|C|1557
4V57|1|DB|C|1558
4V57|1|DB|U|1559
4V57|1|DB|G|1560
4V57|1|DB|C|1561

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2