IL_4V57_341

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases (A, C, G, U)

2576G, 2577A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_341 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1051

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4V57|1|DB|C|2510
4V57|1|DB|U|2511
4V57|1|DB|C|2512
*
4V57|1|DB|G|2574
4V57|1|DB|C|2575
4V57|1|DB|G|2576
4V57|1|DB|A|2577
4V57|1|DB|G|2578

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3