IL_4V5A_016

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_016 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1776

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V5A|1|AA|G|409
4V5A|1|AA|G|410
4V5A|1|AA|A|411
4V5A|1|AA|A|412
4V5A|1|AA|G|413
4V5A|1|AA|A|414
4V5A|1|AA|A|415
4V5A|1|AA|G|416
*
4V5A|1|AA|U|427
4V5A|1|AA|G|428
4V5A|1|AA|U|429
4V5A|1|AA|A|430
4V5A|1|AA|A|431
4V5A|1|AA|A|432
4V5A|1|AA|C|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4