IL_4V5A_018

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_018 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.1738

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5A|1|AA|G|450
4V5A|1|AA|A|451
4V5A|1|AA|A|452
4V5A|1|AA|A|453
4V5A|1|AA|C|454
4V5A|1|AA|C|455
4V5A|1|AA|C|456
*
4V5A|1|AA|G|475
4V5A|1|AA|G|476
4V5A|1|AA|A|477
4V5A|1|AA|C|479
4V5A|1|AA|U|480
4V5A|1|AA|G|481
4V5A|1|AA|A|482
4V5A|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16