IL_4V5A_032

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAACC*GGGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_032 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2802

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V5A|1|AA|C|779
4V5A|1|AA|A|780
4V5A|1|AA|A|781
4V5A|1|AA|A|782
4V5A|1|AA|C|783
4V5A|1|AA|C|784
*
4V5A|1|AA|G|798
4V5A|1|AA|G|799
4V5A|1|AA|G|800
4V5A|1|AA|U|801
4V5A|1|AA|A|802
4V5A|1|AA|G|803

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA