IL_4V5A_041

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GU*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_041 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.3302

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V5A|1|AA|G|1011
4V5A|1|AA|U|1012
*
4V5A|1|AA|G|1017
4V5A|1|AA|C|1018
4V5A|1|AA|C|1019

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14

Chain AS

30S RIBOSOMAL PROTEIN S19