IL_4V5A_221

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_221 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.11

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V5A|1|DA|G|24
4V5A|1|DA|U|25
4V5A|1|DA|G|26
4V5A|1|DA|G|27
4V5A|1|DA|A|28
4V5A|1|DA|U|29
4V5A|1|DA|G|30
*
4V5A|1|DA|C|510
4V5A|1|DA|U|511
4V5A|1|DA|G|512
4V5A|1|DA|A|513
4V5A|1|DA|A|514
4V5A|1|DA|A|515
4V5A|1|DA|C|516

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DW

50S RIBOSOMAL PROTEIN L22