IL_4V5A_257

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V5A|1|DA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_257 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1792

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V5A|1|DA|G|1031
4V5A|1|DA|A|1032
4V5A|1|DA|U|1033
4V5A|1|DA|G|1034
*
4V5A|1|DA|C|1121
4V5A|1|DA|G|1122
4V5A|1|DA|C|1123

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DQ

50S RIBOSOMAL PROTEIN L16