IL_4V5A_277

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_277 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.1292

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V5A|1|DA|G|1666
4V5A|1|DA|G|1667
4V5A|1|DA|A|1668
4V5A|1|DA|A|1669
*
4V5A|1|DA|U|1993
4V5A|1|DA|C|1994

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DO

50S RIBOSOMAL PROTEIN L14