IL_4V5A_299

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_299 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.1677

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V5A|1|DA|G|2454
4V5A|1|DA|G|2455
*
4V5A|1|DA|C|2496
4V5A|1|DA|A|2497
4V5A|1|DA|C|2498

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S RIBOSOMAL PROTEIN L27

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DQ

50S RIBOSOMAL PROTEIN L16