IL_4V5A_311

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CAUAAG

Length

9 nucleotides

Bulged bases

4V5A|1|DA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_311 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.3304

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V5A|1|DA|C|2695
4V5A|1|DA|U|2696
4V5A|1|DA|G|2697
*
4V5A|1|DA|C|2710
4V5A|1|DA|A|2711
4V5A|1|DA|U|2712
4V5A|1|DA|A|2712|||A
4V5A|1|DA|A|2713
4V5A|1|DA|G|2714

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S RIBOSOMAL PROTEIN L17

Chain DT

50S RIBOSOMAL PROTEIN L19