IL_4V5A_355

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_355 not in the Motif Atlas

Geometric match to IL_8C3A_403

Geometric discrepancy: 0.3109

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V5A|1|BB|C|20
4V5A|1|BB|G|21
4V5A|1|BB|U|22
4V5A|1|BB|G|23
*
4V5A|1|BB|C|60
4V5A|1|BB|G|61
4V5A|1|BB|C|62
4V5A|1|BB|G|63

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BG

50S RIBOSOMAL PROTEIN L5