IL_4V5B_003

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCUG*CAGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_003 not in the Motif Atlas

Homologous match to IL_7A0S_104

Geometric discrepancy: 0.5504

The information below is about IL_7A0S_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.4

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V5B|1|AA|C|30
4V5B|1|AA|C|31
4V5B|1|AA|U|32
4V5B|1|AA|G|33
*
4V5B|1|AA|C|49
4V5B|1|AA|A|50
4V5B|1|AA|G|51
4V5B|1|AA|A|52
4V5B|1|AA|A|53
4V5B|1|AA|G|54

Current chains

Chain AA

5S RIBOSOMAL RNA

Nearby chains

Chain AF

50S RIBOSOMAL PROTEIN L5

Chain AO

50S RIBOSOMAL PROTEIN L18