IL_4V5B_017

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4V5B|1|AB|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_017 not in the Motif Atlas

Geometric match to IL_7RQB_019

Geometric discrepancy: 0.2233

The information below is about IL_7RQB_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V5B|1|AB|G|697
4V5B|1|AB|C|698
*
4V5B|1|AB|G|763
4V5B|1|AB|A|764
4V5B|1|AB|C|765

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L2