IL_4V5B_022

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_022 not in the Motif Atlas

Homologous match to IL_7A0S_022

Geometric discrepancy: 0.1487

The information below is about IL_7A0S_022

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V5B|1|AB|C|837
4V5B|1|AB|C|838
*
4V5B|1|AB|G|940
4V5B|1|AB|A|941
4V5B|1|AB|G|942

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A3

50S RIBOSOMAL PROTEIN L35

Chain AL

50S RIBOSOMAL PROTEIN L15