IL_4V5B_029

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_029 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2758

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V5B|1|AB|G|869
4V5B|1|AB|U|870
4V5B|1|AB|U|871
4V5B|1|AB|U|872
*
4V5B|1|AB|A|905
4V5B|1|AB|U|906
4V5B|1|AB|G|907
4V5B|1|AB|C|908

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AM

50S RIBOSOMAL PROTEIN L16