IL_4V5B_029
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUUU*AUGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_029 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2758
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V5B|1|AB|G|869
4V5B|1|AB|U|870
4V5B|1|AB|U|871
4V5B|1|AB|U|872
*
4V5B|1|AB|A|905
4V5B|1|AB|U|906
4V5B|1|AB|G|907
4V5B|1|AB|C|908
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AM
- 50S RIBOSOMAL PROTEIN L16
Coloring options: