IL_4V5B_033

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V5B|1|AB|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_033 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.1738

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V5B|1|AB|G|1011
4V5B|1|AB|U|1012
4V5B|1|AB|C|1013
*
4V5B|1|AB|G|1149
4V5B|1|AB|C|1150

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AJ

50S RIBOSOMAL PROTEIN L13

Chain AQ

50S RIBOSOMAL PROTEIN L20