IL_4V5B_035
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 4V5B|1|AB|A|1127, 4V5B|1|AB|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_035 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1139
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V5B|1|AB|G|1024
4V5B|1|AB|G|1025
4V5B|1|AB|G|1026
4V5B|1|AB|A|1027
4V5B|1|AB|A|1028
4V5B|1|AB|A|1029
4V5B|1|AB|C|1030
*
4V5B|1|AB|G|1124
4V5B|1|AB|G|1125
4V5B|1|AB|A|1126
4V5B|1|AB|A|1127
4V5B|1|AB|G|1128
4V5B|1|AB|A|1129
4V5B|1|AB|U|1130
4V5B|1|AB|G|1131
4V5B|1|AB|U|1132
4V5B|1|AB|A|1133
4V5B|1|AB|A|1134
4V5B|1|AB|C|1135
4V5B|1|AB|G|1136
4V5B|1|AB|G|1137
4V5B|1|AB|G|1138
4V5B|1|AB|G|1139
4V5B|1|AB|C|1140
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 50S RIBOSOMAL PROTEIN L36
- Chain AA
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- 50S RIBOSOMAL PROTEIN L3
- Chain AJ
- 50S RIBOSOMAL PROTEIN L13
- Chain AM
- 50S RIBOSOMAL PROTEIN L16
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