IL_4V5B_042

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGUAAG*UAUCAG

Length

13 nucleotides

Bulged bases

4V5B|1|AB|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|C|1200
4V5B|1|AB|U|1201
4V5B|1|AB|G|1202
4V5B|1|AB|U|1203
4V5B|1|AB|A|1204
4V5B|1|AB|A|1205
4V5B|1|AB|G|1206
*
4V5B|1|AB|U|1240
4V5B|1|AB|A|1241
4V5B|1|AB|U|1242
4V5B|1|AB|C|1243
4V5B|1|AB|A|1244
4V5B|1|AB|G|1245

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L4

Chain AL

50S RIBOSOMAL PROTEIN L15

Chain AQ

50S RIBOSOMAL PROTEIN L20