3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
CG*UGG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5B_086 not in the Motif Atlas
Homologous match to IL_4WF9_094
Geometric discrepancy: 0.1247
The information below is about IL_4WF9_094
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_07039.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

4V5B|1|AB|C|2507
4V5B|1|AB|G|2508
*
4V5B|1|AB|U|2580
4V5B|1|AB|G|2581
4V5B|1|AB|G|2582

Current chains

Chain AB
23S RIBOSOMAL RNA

Nearby chains

Chain AD
50S RIBOSOMAL PROTEIN L3

Coloring options:


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