IL_4V5B_091

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGAGG*CCGAGAUGAG

Length

16 nucleotides

Bulged bases

4V5B|1|AB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|C|2636
4V5B|1|AB|U|2637
4V5B|1|AB|G|2638
4V5B|1|AB|A|2639
4V5B|1|AB|G|2640
4V5B|1|AB|G|2641
*
4V5B|1|AB|C|2773
4V5B|1|AB|C|2774
4V5B|1|AB|G|2775
4V5B|1|AB|A|2776
4V5B|1|AB|G|2777
4V5B|1|AB|A|2778
4V5B|1|AB|U|2779
4V5B|1|AB|G|2780
4V5B|1|AB|A|2781
4V5B|1|AB|G|2782

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L3

Chain AJ

50S RIBOSOMAL PROTEIN L13