IL_4V5B_099

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_099 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1655

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V5B|1|AB|G|2843
4V5B|1|AB|G|2844
4V5B|1|AB|U|2845
4V5B|1|AB|G|2846
*
4V5B|1|AB|C|2870
4V5B|1|AB|U|2871
4V5B|1|AB|A|2872
4V5B|1|AB|A|2873
4V5B|1|AB|C|2874

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AN

50S RIBOSOMAL PROTEIN L17

Chain AP

50S RIBOSOMAL PROTEIN L19