IL_4V5B_103

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

4V5B|1|BA|C|48, 4V5B|1|BA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_103 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.2045

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5B|1|BA|C|47
4V5B|1|BA|C|48
4V5B|1|BA|U|49
4V5B|1|BA|A|50
4V5B|1|BA|A|51
4V5B|1|BA|C|52
*
4V5B|1|BA|G|359
4V5B|1|BA|G|360
4V5B|1|BA|G|361

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BL

30S RIBOSOMAL PROTEIN S12