IL_4V5B_110

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_110 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1484

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V5B|1|BA|C|132
4V5B|1|BA|U|133
4V5B|1|BA|G|134
4V5B|1|BA|C|135
4V5B|1|BA|C|136
*
4V5B|1|BA|G|227
4V5B|1|BA|A|228
4V5B|1|BA|U|229
4V5B|1|BA|G|230

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BP

30S RIBOSOMAL PROTEIN S16

Chain BT

30S RIBOSOMAL PROTEIN S20