3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4V5B|1|BA|A|532, 4V5B|1|BA|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5B_122 not in the Motif Atlas
Homologous match to IL_5J7L_025
Geometric discrepancy: 0.3917
The information below is about IL_5J7L_025
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V5B|1|BA|G|515
4V5B|1|BA|U|516
4V5B|1|BA|G|517
4V5B|1|BA|C|518
4V5B|1|BA|C|519
4V5B|1|BA|A|520
4V5B|1|BA|G|521
*
4V5B|1|BA|C|528
4V5B|1|BA|G|529
4V5B|1|BA|G|530
4V5B|1|BA|U|531
4V5B|1|BA|A|532
4V5B|1|BA|A|533
4V5B|1|BA|U|534
4V5B|1|BA|A|535
4V5B|1|BA|C|536

Current chains

Chain BA
16S RIBOSOMAL RNA

Nearby chains

Chain BC
30S RIBOSOMAL PROTEIN S3
Chain BD
30S RIBOSOMAL PROTEIN S4
Chain BL
30S RIBOSOMAL PROTEIN S12

Coloring options:


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