IL_4V5B_122
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V5B|1|BA|A|532, 4V5B|1|BA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_122 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.3917
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V5B|1|BA|G|515
4V5B|1|BA|U|516
4V5B|1|BA|G|517
4V5B|1|BA|C|518
4V5B|1|BA|C|519
4V5B|1|BA|A|520
4V5B|1|BA|G|521
*
4V5B|1|BA|C|528
4V5B|1|BA|G|529
4V5B|1|BA|G|530
4V5B|1|BA|U|531
4V5B|1|BA|A|532
4V5B|1|BA|A|533
4V5B|1|BA|U|534
4V5B|1|BA|A|535
4V5B|1|BA|C|536
Current chains
- Chain BA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 30S RIBOSOMAL PROTEIN S3
- Chain BD
- 30S RIBOSOMAL PROTEIN S4
- Chain BL
- 30S RIBOSOMAL PROTEIN S12
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