IL_4V5B_122

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V5B|1|BA|A|532, 4V5B|1|BA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_122 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.3917

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5B|1|BA|G|515
4V5B|1|BA|U|516
4V5B|1|BA|G|517
4V5B|1|BA|C|518
4V5B|1|BA|C|519
4V5B|1|BA|A|520
4V5B|1|BA|G|521
*
4V5B|1|BA|C|528
4V5B|1|BA|G|529
4V5B|1|BA|G|530
4V5B|1|BA|U|531
4V5B|1|BA|A|532
4V5B|1|BA|A|533
4V5B|1|BA|U|534
4V5B|1|BA|A|535
4V5B|1|BA|C|536

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BC

30S RIBOSOMAL PROTEIN S3

Chain BD

30S RIBOSOMAL PROTEIN S4

Chain BL

30S RIBOSOMAL PROTEIN S12