3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
AGAAUUCC*GGAGGAAU
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5B|1|BA|A|673
4V5B|1|BA|G|674
4V5B|1|BA|A|675
4V5B|1|BA|A|676
4V5B|1|BA|U|677
4V5B|1|BA|U|678
4V5B|1|BA|C|679
4V5B|1|BA|C|680
*
4V5B|1|BA|G|710
4V5B|1|BA|G|711
4V5B|1|BA|A|712
4V5B|1|BA|G|713
4V5B|1|BA|G|714
4V5B|1|BA|A|715
4V5B|1|BA|A|716
4V5B|1|BA|U|717

Current chains

Chain BA
16S RIBOSOMAL RNA

Nearby chains

Chain AC
50S RIBOSOMAL PROTEIN L2
Chain BF
30S RIBOSOMAL PROTEIN S6
Chain BK
30S RIBOSOMAL PROTEIN S11
Chain BR
30S RIBOSOMAL PROTEIN S18
Chain BU
30S RIBOSOMAL PROTEIN S21

Coloring options:

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