3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GGGAGC*GUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5B_132 not in the Motif Atlas
Geometric match to IL_4V88_435
Geometric discrepancy: 0.2845
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

4V5B|1|BA|G|774
4V5B|1|BA|G|775
4V5B|1|BA|G|776
4V5B|1|BA|A|777
4V5B|1|BA|G|778
4V5B|1|BA|C|779
*
4V5B|1|BA|G|803
4V5B|1|BA|U|804
4V5B|1|BA|C|805

Current chains

Chain BA
16S RIBOSOMAL RNA

Nearby chains

Chain AB
Large subunit ribosomal RNA; LSU rRNA
Chain AC
50S RIBOSOMAL PROTEIN L2
Chain BK
30S RIBOSOMAL PROTEIN S11
Chain BU
30S RIBOSOMAL PROTEIN S21

Coloring options:


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