IL_4V5B_133

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_133 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.1732

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V5B|1|BA|C|779
4V5B|1|BA|A|780
4V5B|1|BA|A|781
4V5B|1|BA|A|782
4V5B|1|BA|C|783
*
4V5B|1|BA|G|799
4V5B|1|BA|G|800
4V5B|1|BA|U|801
4V5B|1|BA|A|802
4V5B|1|BA|G|803

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S RIBOSOMAL PROTEIN S11

Chain BU

30S RIBOSOMAL PROTEIN S21