IL_4V5B_136

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

4V5B|1|BA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_136 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1687

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5B|1|BA|G|925
4V5B|1|BA|G|926
4V5B|1|BA|G|927
4V5B|1|BA|G|928
*
4V5B|1|BA|C|1389
4V5B|1|BA|U|1390
4V5B|1|BA|U|1391

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S7