IL_4V5B_140

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V5B|1|BA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_140 not in the Motif Atlas

Geometric match to IL_2PN3_003

Geometric discrepancy: 0.3435

The information below is about IL_2PN3_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V5B|1|BA|G|1048
4V5B|1|BA|U|1049
4V5B|1|BA|G|1050
*
4V5B|1|BA|C|1208
4V5B|1|BA|C|1209

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BN

30S RIBOSOMAL PROTEIN S14