IL_4V5B_151

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCCCG*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_151 not in the Motif Atlas

Homologous match to IL_6CZR_166

Geometric discrepancy: 0.2901

The information below is about IL_6CZR_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|BA|G|1401
4V5B|1|BA|C|1402
4V5B|1|BA|C|1403
4V5B|1|BA|C|1404
4V5B|1|BA|G|1405
*
4V5B|1|BA|C|1496
4V5B|1|BA|G|1497
4V5B|1|BA|U|1498
4V5B|1|BA|A|1499
4V5B|1|BA|A|1500
4V5B|1|BA|C|1501

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA