IL_4V5B_159

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_159 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.1298

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|G|24
4V5B|1|CB|U|25
4V5B|1|CB|G|26
4V5B|1|CB|G|27
4V5B|1|CB|A|28
4V5B|1|CB|U|29
4V5B|1|CB|G|30
*
4V5B|1|CB|C|510
4V5B|1|CB|U|511
4V5B|1|CB|G|512
4V5B|1|CB|A|513
4V5B|1|CB|A|514
4V5B|1|CB|A|515
4V5B|1|CB|C|516

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C0

50S RIBOSOMAL PROTEIN L32

Chain CQ

50S RIBOSOMAL PROTEIN L20

Chain CS

50S RIBOSOMAL PROTEIN L22