3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GC*GAU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5B_162 not in the Motif Atlas
Geometric match to IL_5TBW_009
Geometric discrepancy: 0.3088
The information below is about IL_5TBW_009
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

4V5B|1|CB|G|75
4V5B|1|CB|C|76
*
4V5B|1|CB|G|110
4V5B|1|CB|A|111
4V5B|1|CB|U|112

Current chains

Chain CB
23S RIBOSOMAL RNA

Nearby chains

Chain CX
50S RIBOSOMAL PROTEIN L29

Coloring options:


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