IL_4V5B_183

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UUUCG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_183 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3459

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V5B|1|CB|U|870
4V5B|1|CB|U|871
4V5B|1|CB|U|872
4V5B|1|CB|C|873
4V5B|1|CB|G|874
*
4V5B|1|CB|C|903
4V5B|1|CB|G|904
4V5B|1|CB|A|905
4V5B|1|CB|U|906
4V5B|1|CB|G|907

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

5S ribosomal RNA; 5S rRNA

Chain CM

50S RIBOSOMAL PROTEIN L16