IL_4V5B_185

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V5B|1|CB|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_185 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.1405

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V5B|1|CB|C|998
4V5B|1|CB|U|999
4V5B|1|CB|A|1000
4V5B|1|CB|A|1001
4V5B|1|CB|G|1002
*
4V5B|1|CB|C|1153
4V5B|1|CB|G|1154
4V5B|1|CB|A|1155
4V5B|1|CB|A|1156
4V5B|1|CB|G|1157

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

5S ribosomal RNA; 5S rRNA

Chain CQ

50S RIBOSOMAL PROTEIN L20

Chain CR

50S RIBOSOMAL PROTEIN L21

Chain CY

50S RIBOSOMAL PROTEIN L30