IL_4V5B_188

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_188 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1531

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V5B|1|CB|U|1018
4V5B|1|CB|U|1019
4V5B|1|CB|A|1020
4V5B|1|CB|A|1021
4V5B|1|CB|G|1022
4V5B|1|CB|U|1023
4V5B|1|CB|G|1024
*
4V5B|1|CB|C|1140
4V5B|1|CB|U|1141
4V5B|1|CB|A|1142
4V5B|1|CB|A|1143
4V5B|1|CB|A|1144

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C4

50S RIBOSOMAL PROTEIN L36

Chain CG

50S RIBOSOMAL PROTEIN L6

Chain CJ

50S RIBOSOMAL PROTEIN L13