3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GGGAAACGAUG*CGCGGAAGAUGUAACGGGGC
Length
31 nucleotides
Bulged bases
4V5B|1|CB|U|1033, 4V5B|1|CB|A|1127, 4V5B|1|CB|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5B|1|CB|G|1024
4V5B|1|CB|G|1025
4V5B|1|CB|G|1026
4V5B|1|CB|A|1027
4V5B|1|CB|A|1028
4V5B|1|CB|A|1029
4V5B|1|CB|C|1030
4V5B|1|CB|G|1031
4V5B|1|CB|A|1032
4V5B|1|CB|U|1033
4V5B|1|CB|G|1034
*
4V5B|1|CB|C|1121
4V5B|1|CB|G|1122
4V5B|1|CB|C|1123
4V5B|1|CB|G|1124
4V5B|1|CB|G|1125
4V5B|1|CB|A|1126
4V5B|1|CB|A|1127
4V5B|1|CB|G|1128
4V5B|1|CB|A|1129
4V5B|1|CB|U|1130
4V5B|1|CB|G|1131
4V5B|1|CB|U|1132
4V5B|1|CB|A|1133
4V5B|1|CB|A|1134
4V5B|1|CB|C|1135
4V5B|1|CB|G|1136
4V5B|1|CB|G|1137
4V5B|1|CB|G|1138
4V5B|1|CB|G|1139
4V5B|1|CB|C|1140

Current chains

Chain CB
23S RIBOSOMAL RNA

Nearby chains

Chain C4
50S RIBOSOMAL PROTEIN L36
Chain CA
5S ribosomal RNA; 5S rRNA
Chain CD
50S RIBOSOMAL PROTEIN L3
Chain CG
50S RIBOSOMAL PROTEIN L6
Chain CJ
50S RIBOSOMAL PROTEIN L13
Chain CM
50S RIBOSOMAL PROTEIN L16

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1325 s