IL_4V5B_189
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GGGAAACGAUG*CGCGGAAGAUGUAACGGGGC
- Length
- 31 nucleotides
- Bulged bases
- 4V5B|1|CB|U|1033, 4V5B|1|CB|A|1127, 4V5B|1|CB|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|CB|G|1024
4V5B|1|CB|G|1025
4V5B|1|CB|G|1026
4V5B|1|CB|A|1027
4V5B|1|CB|A|1028
4V5B|1|CB|A|1029
4V5B|1|CB|C|1030
4V5B|1|CB|G|1031
4V5B|1|CB|A|1032
4V5B|1|CB|U|1033
4V5B|1|CB|G|1034
*
4V5B|1|CB|C|1121
4V5B|1|CB|G|1122
4V5B|1|CB|C|1123
4V5B|1|CB|G|1124
4V5B|1|CB|G|1125
4V5B|1|CB|A|1126
4V5B|1|CB|A|1127
4V5B|1|CB|G|1128
4V5B|1|CB|A|1129
4V5B|1|CB|U|1130
4V5B|1|CB|G|1131
4V5B|1|CB|U|1132
4V5B|1|CB|A|1133
4V5B|1|CB|A|1134
4V5B|1|CB|C|1135
4V5B|1|CB|G|1136
4V5B|1|CB|G|1137
4V5B|1|CB|G|1138
4V5B|1|CB|G|1139
4V5B|1|CB|C|1140
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C4
- 50S RIBOSOMAL PROTEIN L36
- Chain CA
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- 50S RIBOSOMAL PROTEIN L3
- Chain CG
- 50S RIBOSOMAL PROTEIN L6
- Chain CJ
- 50S RIBOSOMAL PROTEIN L13
- Chain CM
- 50S RIBOSOMAL PROTEIN L16
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