IL_4V5B_199

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

4V5B|1|CB|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_199 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.5944

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5B|1|CB|U|1415
4V5B|1|CB|G|1416
*
4V5B|1|CB|C|1582
4V5B|1|CB|A|1583
4V5B|1|CB|U|1584
4V5B|1|CB|C|1585
4V5B|1|CB|A|1586
4V5B|1|CB|G|1587

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains