IL_4V5B_213

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4V5B|1|CB|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_213 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.2251

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V5B|1|CB|U|1712
4V5B|1|CB|A|1713
4V5B|1|CB|U|1714
4V5B|1|CB|G|1715
4V5B|1|CB|U|1716
4V5B|1|CB|A|1717
4V5B|1|CB|G|1718
*
4V5B|1|CB|U|1742
4V5B|1|CB|G|1743
4V5B|1|CB|A|1744
4V5B|1|CB|A|1745
4V5B|1|CB|A|1746

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains