IL_4V5B_225

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGA*UCC

Length

7 nucleotides

Bulged bases

4V5B|1|CB|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_225 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2022

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5B|1|CB|G|2067
4V5B|1|CB|U|2068
4V5B|1|CB|G|2069
4V5B|1|CB|A|2070
*
4V5B|1|CB|U|2441
4V5B|1|CB|C|2442
4V5B|1|CB|C|2443

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CE

50S RIBOSOMAL PROTEIN L4

Chain CL

50S RIBOSOMAL PROTEIN L15