IL_4V5B_227

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V5B|1|CB|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_227 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1782

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V5B|1|CB|U|2081
4V5B|1|CB|A|2082
4V5B|1|CB|G|2083
*
4V5B|1|CB|U|2236
4V5B|1|CB|G|2237
4V5B|1|CB|G|2238
4V5B|1|CB|G|2239

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain CZ

50S RIBOSOMAL PROTEIN L31