IL_4V5B_230

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AUGGAAGUGUG*UGCAUGGCUU

Length

21 nucleotides

Bulged bases

4V5B|1|CB|G|2133

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|A|2108
4V5B|1|CB|U|2109
4V5B|1|CB|G|2110
4V5B|1|CB|G|2133
4V5B|1|CB|A|2134
4V5B|1|CB|A|2135
4V5B|1|CB|G|2136
4V5B|1|CB|U|2137
4V5B|1|CB|G|2138
4V5B|1|CB|U|2139
4V5B|1|CB|G|2140
*
4V5B|1|CB|U|2151
4V5B|1|CB|G|2152
4V5B|1|CB|C|2153
4V5B|1|CB|A|2154
4V5B|1|CB|U|2155
4V5B|1|CB|G|2156
4V5B|1|CB|G|2157
4V5B|1|CB|C|2179
4V5B|1|CB|U|2180
4V5B|1|CB|U|2181

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains