IL_4V5B_234

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_234 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3049

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V5B|1|CB|C|2456
4V5B|1|CB|U|2457
4V5B|1|CB|G|2458
4V5B|1|CB|A|2459
*
4V5B|1|CB|U|2493
4V5B|1|CB|G|2494
4V5B|1|CB|G|2495

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CM

50S RIBOSOMAL PROTEIN L16