IL_4V5B_246

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

4V5B|1|CB|C|2712, 4V5B|1|CB|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_246 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3459

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V5B|1|CB|G|2694
4V5B|1|CB|U|2695
4V5B|1|CB|U|2696
*
4V5B|1|CB|A|2711
4V5B|1|CB|C|2712
4V5B|1|CB|U|2713
4V5B|1|CB|G|2714
4V5B|1|CB|C|2715

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CN

50S RIBOSOMAL PROTEIN L17

Chain CP

50S RIBOSOMAL PROTEIN L19