IL_4V5B_265

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UAGUA*UAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_265 not in the Motif Atlas

Homologous match to IL_6CZR_124

Geometric discrepancy: 0.3975

The information below is about IL_6CZR_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38684.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5B|1|DA|U|249
4V5B|1|DA|A|250
4V5B|1|DA|G|251
4V5B|1|DA|U|252
4V5B|1|DA|A|253
*
4V5B|1|DA|U|273
4V5B|1|DA|A|274
4V5B|1|DA|G|275

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DQ

30S RIBOSOMAL PROTEIN S17