IL_4V5B_267

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CACAAU*AUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_267 not in the Motif Atlas

Geometric match to IL_4WF9_114

Geometric discrepancy: 0.3805

The information below is about IL_4WF9_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10810.1

Basepair signature

cWW-L-cWS-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V5B|1|DA|C|370
4V5B|1|DA|A|371
4V5B|1|DA|C|372
4V5B|1|DA|A|373
4V5B|1|DA|A|374
4V5B|1|DA|U|375
*
4V5B|1|DA|A|389
4V5B|1|DA|U|390
4V5B|1|DA|G|391

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DP

30S RIBOSOMAL PROTEIN S16