IL_4V5B_272

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAGGAAGG*UUGACGUUAC

Length

19 nucleotides

Bulged bases

4V5B|1|DA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|446
4V5B|1|DA|G|447
4V5B|1|DA|A|448
4V5B|1|DA|G|449
4V5B|1|DA|G|450
4V5B|1|DA|A|451
4V5B|1|DA|A|452
4V5B|1|DA|G|453
4V5B|1|DA|G|454
*
4V5B|1|DA|U|479
4V5B|1|DA|U|480
4V5B|1|DA|G|481
4V5B|1|DA|A|482
4V5B|1|DA|C|483
4V5B|1|DA|G|484
4V5B|1|DA|U|485
4V5B|1|DA|U|486
4V5B|1|DA|A|487
4V5B|1|DA|C|488

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DD

30S RIBOSOMAL PROTEIN S4

Chain DP

30S RIBOSOMAL PROTEIN S16