IL_4V5B_279

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_279 not in the Motif Atlas

Geometric match to IL_4WF9_114

Geometric discrepancy: 0.3901

The information below is about IL_4WF9_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10810.1

Basepair signature

cWW-L-cWS-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V5B|1|DA|G|597
4V5B|1|DA|U|598
4V5B|1|DA|C|599
*
4V5B|1|DA|G|639
4V5B|1|DA|A|640
4V5B|1|DA|U|641
4V5B|1|DA|A|642
4V5B|1|DA|C|643

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DH

30S RIBOSOMAL PROTEIN S8

Chain DQ

30S RIBOSOMAL PROTEIN S17