IL_4V5B_281
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GAG*CUGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_281 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.347
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V5B|1|DA|G|654
4V5B|1|DA|A|655
4V5B|1|DA|G|656
*
4V5B|1|DA|C|750
4V5B|1|DA|U|751
4V5B|1|DA|G|752
4V5B|1|DA|A|753
4V5B|1|DA|C|754
Current chains
- Chain DA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain DH
- 30S RIBOSOMAL PROTEIN S8
- Chain DO
- 30S RIBOSOMAL PROTEIN S15
Coloring options: