IL_4V5B_284

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGGAGC*GUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|773
4V5B|1|DA|G|774
4V5B|1|DA|G|775
4V5B|1|DA|G|776
4V5B|1|DA|A|777
4V5B|1|DA|G|778
4V5B|1|DA|C|779
*
4V5B|1|DA|G|803
4V5B|1|DA|U|804
4V5B|1|DA|C|805
4V5B|1|DA|C|806

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain DK

30S RIBOSOMAL PROTEIN S11

Chain DO

30S RIBOSOMAL PROTEIN S15

Chain DU

30S RIBOSOMAL PROTEIN S21